Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3771

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12138 and 12139 are separated by 968 nucleotides12139 and 12140 are separated by 146 nucleotides mRNA_3770: 12138 - K12606 RCD1, CNOT9, CAF40 CCR4-NOT transcription complex subunit 9, at 542,766 to 544,325 12138 mRNA_3771: 12139 - K02866 RP-L10e, RPL10 large subunit ribosomal protein L10e, at 545,294 to 546,306 12139 mRNA_3772: 12140 - K17662 CBP3, UQCC cytochrome b pre-mRNA-processing protein 3, at 546,453 to 547,644 12140

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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544,294 + +1.6
544,298 - +0.1
544,305 - +0.3
544,440 - -0.9
544,491 - +0.8
544,591 - +0.4
544,594 - +1.2
544,594 - -0.2
544,594 - +1.0
544,603 - +1.3
546,379 - -2.2
546,394 + -0.2
546,507 - +1.0
546,520 + -0.7
546,538 - +0.2
546,557 - +0.0
546,914 + 12140 mRNA_3772 0.39 -1.0

Or see this region's nucleotide sequence