Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3780

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12147 and 12148 are separated by 246 nucleotides mRNA_3779: 12147 - HMMPfam-Spc19-PF08287, at 560,572 to 561,347 12147 mRNA_3780: 12148 - KOG1426 FOG RCC1 domain, at 561,594 to 563,970 12148

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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561,275 + -1.2
561,419 - +0.9
561,563 + +1.6
561,660 - -0.1
561,672 - -0.6
561,718 + +0.3
561,844 + 12148 mRNA_3780 0.11 -1.2
561,846 - 12148 mRNA_3780 0.11 +0.5
561,847 + 12148 mRNA_3780 0.11 +0.9
561,848 - 12148 mRNA_3780 0.11 -0.3
561,851 - 12148 mRNA_3780 0.11 +2.9
561,852 + 12148 mRNA_3780 0.11 +2.4
561,870 + 12148 mRNA_3780 0.12 +1.0
561,987 + 12148 mRNA_3780 0.17 -0.5
561,992 - 12148 mRNA_3780 0.17 -0.1
561,992 - 12148 mRNA_3780 0.17 -0.8
562,005 - 12148 mRNA_3780 0.17 +0.8
562,153 - 12148 mRNA_3780 0.24 +0.1
562,891 + 12148 mRNA_3780 0.55 +0.3
563,038 - 12148 mRNA_3780 0.61 -1.6
563,168 - 12148 mRNA_3780 0.66 -0.1
563,319 - 12148 mRNA_3780 0.73 +1.1
563,960 - +0.8
564,255 + +2.5
564,483 - -0.4
564,492 + +0.0
564,642 - -0.7
564,762 + +0.2

Or see this region's nucleotide sequence