Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3788

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12155 and 12156 are separated by 56 nucleotides12156 and 12157 are separated by 290 nucleotides mRNA_3787: 12155 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 581,185 to 583,154 12155 mRNA_3788: 12156 - Hypothetical Protein, at 583,211 to 584,056 12156 mRNA_3789: 12157 - K09584 PDIA6, TXNDC7 protein disulfide-isomerase A6, at 584,347 to 585,517 12157

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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582,482 + 12155 mRNA_3787 0.66 -0.2
582,666 - 12155 mRNA_3787 0.75 -0.6
583,275 + +2.9
583,284 + -0.6
583,345 + 12156 mRNA_3788 0.16 +1.6
583,371 - 12156 mRNA_3788 0.19 -0.5
583,409 + 12156 mRNA_3788 0.23 +1.9
583,409 - 12156 mRNA_3788 0.23 +2.4
583,415 - 12156 mRNA_3788 0.24 +1.2
583,430 + 12156 mRNA_3788 0.26 +0.9
583,713 - 12156 mRNA_3788 0.59 +0.8
584,317 - +2.0
584,921 + 12157 mRNA_3789 0.49 +0.2

Or see this region's nucleotide sequence