Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3805

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12172 and 12173 are separated by 113 nucleotides12173 and 12174 are separated by 140 nucleotides mRNA_3804: 12172 - Hypothetical Protein, at 616,342 to 617,222 12172 mRNA_3805: 12173 - Hypothetical Protein, at 617,336 to 618,142 12173 mRNA_3806: 12174 - K02365 ESP1 separase, at 618,283 to 626,082 12174

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
616,503 + 12172 mRNA_3804 0.18 +0.3
616,531 + 12172 mRNA_3804 0.21 +1.4
616,537 - 12172 mRNA_3804 0.22 +3.0
616,689 + 12172 mRNA_3804 0.39 -1.4
616,689 + 12172 mRNA_3804 0.39 +0.8
616,689 + 12172 mRNA_3804 0.39 +0.8
616,691 - 12172 mRNA_3804 0.40 +0.5
616,816 + 12172 mRNA_3804 0.54 +0.5
616,846 - 12172 mRNA_3804 0.57 +0.5
616,969 - 12172 mRNA_3804 0.71 +0.7
616,977 + 12172 mRNA_3804 0.72 +0.4
616,981 + 12172 mRNA_3804 0.73 -0.1
617,008 - 12172 mRNA_3804 0.76 +3.5
617,114 - 12172 mRNA_3804 0.88 +1.8
617,117 - 12172 mRNA_3804 0.88 +1.0
617,140 - -0.1

Or see this region's nucleotide sequence