Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3814

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12181 and 12182 are separated by 20 nucleotides12182 and 12183 are separated by 420 nucleotides mRNA_3813: 12181 - BLAST zinc finger, C3HC4 type (RING finger) protein [Rhizoc..., at 640,122 to 642,119 12181 mRNA_3814: 12182 - PRINTS-Proline rich extensin signature-PR01217, at 642,140 to 643,933 12182 mRNA_3815: 12183 - K06631 PLK1 polo-like kinase 1, at 644,354 to 647,784 12183

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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641,818 - 12181 mRNA_3813 0.85 -0.1
642,393 - 12182 mRNA_3814 0.14 +0.5
642,474 - 12182 mRNA_3814 0.19 -1.2
642,692 - 12182 mRNA_3814 0.31 -0.2
642,695 + 12182 mRNA_3814 0.31 +1.9
643,124 + 12182 mRNA_3814 0.55 -1.0
643,397 - 12182 mRNA_3814 0.70 +1.1
643,554 - 12182 mRNA_3814 0.79 -2.1
643,696 - 12182 mRNA_3814 0.87 -1.3
643,837 - +0.7
643,867 + -1.5
644,275 - +0.9
644,305 - +1.0
644,307 - -1.0
644,455 - -2.4
644,460 + -3.2

Or see this region's nucleotide sequence