Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3830

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12197 and 12198 are separated by 691 nucleotides12198 and 12199 are separated by 355 nucleotides mRNA_3829: 12197 - KOG0519 Sensory transduction histidine kinase, at 684,010 to 687,695 12197 mRNA_3830: 12198 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 688,387 to 689,344 12198 mRNA_3831: 12199 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 689,700 to 690,633 12199

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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687,950 + +0.1
688,305 + +0.9
688,807 - 12198 mRNA_3830 0.44 -2.4
689,290 - +1.1
689,319 + -0.7
689,463 + -1.4
689,587 - +0.5
689,781 - +1.3
689,853 - 12199 mRNA_3831 0.16 +0.6
689,907 + 12199 mRNA_3831 0.22 +0.9
690,041 - 12199 mRNA_3831 0.37 +0.4
690,207 + 12199 mRNA_3831 0.54 +0.7

Or see this region's nucleotide sequence