Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3832

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12199 and 12200 are separated by 315 nucleotides12200 and 12201 are separated by 300 nucleotides mRNA_3831: 12199 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 689,700 to 690,633 12199 mRNA_3832: 12200 - Hypothetical Protein, at 690,949 to 691,867 12200 mRNA_3833: 12201 - K15196 BRF1, GTF3B transcription factor IIIB 90 kDa subunit, at 692,168 to 694,484 12201

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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690,041 - 12199 mRNA_3831 0.37 +0.4
690,207 + 12199 mRNA_3831 0.54 +0.7
690,470 + 12199 mRNA_3831 0.82 +0.9
690,634 + -0.4
690,777 - -0.7
691,193 - 12200 mRNA_3832 0.27 +4.1
691,202 + 12200 mRNA_3832 0.28 +2.8
691,813 + +1.2
691,917 - +0.7
691,919 - +0.4
691,927 + +0.4
691,928 - +0.5
691,936 + +2.7
691,949 - +2.0
691,973 - +1.2
691,996 - +0.4
692,113 + +2.0
692,205 - -0.7
692,399 + +0.6
692,401 + 12201 mRNA_3833 0.10 -1.3
692,403 - 12201 mRNA_3833 0.10 -0.3

Or see this region's nucleotide sequence