Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3857

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12224 and 12225 are separated by 162 nucleotides12225 and 12226 are separated by 602 nucleotides mRNA_3856: 12224 - Hypothetical Protein, at 752,921 to 753,919 12224 mRNA_3857: 12225 - Interpro Mysoin-binding motif of peroxisomes, at 754,082 to 757,282 12225 mRNA_3858: 12226 - K17890 ATG16L1 autophagy-related protein 16-1, at 757,885 to 761,783 12226

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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753,282 + 12224 mRNA_3856 0.36 +0.5
753,655 - 12224 mRNA_3856 0.73 +1.3
753,812 - 12224 mRNA_3856 0.89 -0.1
753,817 - 12224 mRNA_3856 0.90 -1.5
755,751 + 12225 mRNA_3857 0.52 -1.6
755,850 + 12225 mRNA_3857 0.55 -0.0
756,191 + 12225 mRNA_3857 0.66 +0.1
756,935 - 12225 mRNA_3857 0.89 +0.4
757,046 + -0.4
757,414 + +1.2
757,514 - -0.6
757,514 + -1.3
757,681 + +0.3
757,945 - +0.6
757,947 - +0.4
758,100 + -0.8
758,250 - +2.9

Or see this region's nucleotide sequence