Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3873

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12240 and 12241 are separated by 196 nucleotides12241 and 12242 are separated by 71 nucleotides mRNA_3872: 12240 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 794,856 to 799,909 12240 mRNA_3873: 12241 - BLAST putative protein [Neurospora crassa], at 800,106 to 800,939 12241 mRNA_3874: 12242 - KOG1535 Predicted fumarylacetoacetate hydralase, at 801,011 to 802,122 12242

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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799,203 - 12240 mRNA_3872 0.86 -0.1
799,207 - 12240 mRNA_3872 0.86 +0.9
799,606 - -0.6
800,119 + +0.4
800,362 - 12241 mRNA_3873 0.31 +1.9
800,372 + 12241 mRNA_3873 0.32 -0.5
800,537 - 12241 mRNA_3873 0.52 -0.1
800,689 - 12241 mRNA_3873 0.70 +2.2
800,696 + 12241 mRNA_3873 0.71 +2.0
800,696 + 12241 mRNA_3873 0.71 +0.4
800,729 + 12241 mRNA_3873 0.75 -0.0
800,781 - 12241 mRNA_3873 0.81 -0.5
800,841 - 12241 mRNA_3873 0.88 -0.7
800,845 + 12241 mRNA_3873 0.89 -0.3
800,881 - +1.6
800,960 - +0.6
801,017 + +1.9
801,111 - +0.5
801,117 + +1.2
801,134 + 12242 mRNA_3874 0.11 +0.7
801,141 + 12242 mRNA_3874 0.12 +1.6
801,387 - 12242 mRNA_3874 0.34 +0.5
801,414 - 12242 mRNA_3874 0.36 -0.3
801,831 + 12242 mRNA_3874 0.74 +2.2
801,837 - 12242 mRNA_3874 0.74 -0.5
801,844 + 12242 mRNA_3874 0.75 -0.7
801,860 + 12242 mRNA_3874 0.76 +0.2

Or see this region's nucleotide sequence