Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3903

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12270 and 12271 are separated by 296 nucleotides12271 and 12272 are separated by 49 nucleotides mRNA_3902: 12270 - K12471 EPN epsin, at 855,134 to 857,273 12270 mRNA_3903: 12271 - K01273 DPEP membrane dipeptidase, at 857,570 to 859,111 12271 mRNA_3904: 12272 - KOG1176 Acyl-CoA synthetase, at 859,161 to 861,426 12272

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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856,578 + 12270 mRNA_3902 0.67 -2.1
857,355 - +1.2
857,490 + -0.9
857,506 - +1.8
857,514 - -0.3
857,527 + -0.5
857,536 + +0.7
857,697 + +0.1
857,787 - 12271 mRNA_3903 0.14 -0.4
857,820 + 12271 mRNA_3903 0.16 +0.2
857,840 + 12271 mRNA_3903 0.18 +1.7
857,861 + 12271 mRNA_3903 0.19 +2.2
858,266 - 12271 mRNA_3903 0.45 +1.4
858,291 + 12271 mRNA_3903 0.47 +0.3
858,294 - 12271 mRNA_3903 0.47 -0.9
858,744 + 12271 mRNA_3903 0.76 +1.2
858,795 + 12271 mRNA_3903 0.79 -0.4
859,010 + -0.0
859,262 - +3.0
859,540 - 12272 mRNA_3904 0.17 +0.4
859,617 + 12272 mRNA_3904 0.20 -1.3
859,736 - 12272 mRNA_3904 0.25 +0.1
859,751 - 12272 mRNA_3904 0.26 -2.6
859,759 + 12272 mRNA_3904 0.26 +1.3
860,077 - 12272 mRNA_3904 0.40 +0.2

Or see this region's nucleotide sequence