Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3916

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12283 and 12284 are separated by 124 nucleotides12284 and 12285 are separated by 144 nucleotides mRNA_3915: 12283 - K01062 PLA2G7, PAFAH platelet-activating factor acetylhydrolase, at 890,640 to 892,402 12283 mRNA_3916: 12284 - K02736 PSMB4 20S proteasome subunit beta 7, at 892,527 to 893,886 12284 mRNA_3917: 12285 - KOG4479 Transcription factor e(y)2, at 894,031 to 894,594 12285

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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891,737 + 12283 mRNA_3915 0.62 +0.1
891,879 + 12283 mRNA_3915 0.70 +0.1
891,993 - 12283 mRNA_3915 0.77 +2.0
892,288 + +0.7
892,303 + +0.3
892,447 - +0.5
892,463 + -0.7
892,478 - +2.3
893,871 - +0.8
894,047 + -1.2
894,337 - 12285 mRNA_3917 0.54 +1.0
894,437 - 12285 mRNA_3917 0.72 -1.9
894,482 - 12285 mRNA_3917 0.80 +0.1
894,780 + -0.5
894,794 - +2.8

Or see this region's nucleotide sequence