Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3984

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12352 and 12353 are separated by 727 nucleotides mRNA_3984: 12352 - Hypothetical Protein, at 1,073,913 to 1,075,521 12352 mRNA_3985: 12353 - K03448 FEN2, LIZ1 MFS transporter, ACS family, pantothenate transporter, at 1,076,249 to 1,078,580 12353

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,072,927 + +2.2
1,072,929 + -1.2
1,073,054 - +1.5
1,073,070 - +3.1
1,073,388 + -0.0
1,073,638 + +0.8
1,074,269 + 12352 mRNA_3984 0.22 +2.1
1,074,270 + 12352 mRNA_3984 0.22 -0.2
1,074,466 - 12352 mRNA_3984 0.34 +0.4
1,074,624 + 12352 mRNA_3984 0.44 +2.7
1,074,689 - 12352 mRNA_3984 0.48 -0.9
1,074,871 + 12352 mRNA_3984 0.60 +1.5
1,074,880 + 12352 mRNA_3984 0.60 +0.4
1,074,999 + 12352 mRNA_3984 0.67 -0.8
1,075,001 + 12352 mRNA_3984 0.68 -0.6
1,075,147 - 12352 mRNA_3984 0.77 +0.5
1,075,151 + 12352 mRNA_3984 0.77 +0.9
1,075,152 - 12352 mRNA_3984 0.77 +0.5
1,075,161 + 12352 mRNA_3984 0.78 +1.5
1,075,168 + 12352 mRNA_3984 0.78 +1.1
1,075,175 - 12352 mRNA_3984 0.78 -0.0
1,075,184 + 12352 mRNA_3984 0.79 -0.3
1,075,282 - 12352 mRNA_3984 0.85 +0.2
1,075,314 - 12352 mRNA_3984 0.87 +1.8
1,075,326 + 12352 mRNA_3984 0.88 -0.4
1,075,332 + 12352 mRNA_3984 0.88 +0.5
1,075,463 - +0.8
1,075,464 + +1.1
1,075,465 - +2.0
1,075,466 - -0.2
1,075,471 + +1.7
1,075,473 + +0.8
1,075,486 + -1.0
1,075,492 + +1.2
1,075,495 + -0.0
1,075,623 - +3.8
1,075,628 - +3.0
1,075,647 + -1.6
1,075,667 + -0.0
1,075,671 - +2.8
1,075,671 - -1.9
1,075,674 + +0.1
1,075,676 - +2.4
1,075,678 - +0.1
1,075,694 + +0.1
1,075,698 - +1.3
1,075,727 - -0.6
1,075,927 + +0.7
1,075,938 - +1.3
1,075,947 - -0.2
1,075,952 + -0.3
1,075,953 + +0.0
1,075,994 + +1.2
1,076,112 - -1.4
1,076,135 - +0.0

Or see this region's nucleotide sequence