Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4010

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12377 and 12378 are separated by 616 nucleotides12378 and 12379 are separated by 384 nucleotides mRNA_4009: 12377 - K10639 CCNB1IP1, HEI10 E3 ubiquitin-protein ligase CCNP1IP1, at 1,140,211 to 1,141,922 12377 mRNA_4010: 12378 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SMART-Leucine-rich repeat - CC (cysteine-containing) subfamily-SM00367,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1,142,539 to 1,145,554 12378 mRNA_4011: 12379 - HMMPfam-Retinoic acid induced 16-like protein-PF10257, at 1,145,939 to 1,149,704 12379

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,141,655 + 12377 mRNA_4009 0.84 -0.4
1,142,815 - +1.5
1,143,039 - 12378 mRNA_4010 0.17 +0.7
1,143,415 + 12378 mRNA_4010 0.29 +0.1
1,144,469 + 12378 mRNA_4010 0.64 -0.3
1,144,724 - 12378 mRNA_4010 0.72 +0.5
1,144,904 - 12378 mRNA_4010 0.78 +1.6
1,145,169 - 12378 mRNA_4010 0.87 -0.2
1,145,206 + 12378 mRNA_4010 0.88 +2.0
1,145,284 - -1.1
1,145,477 + -0.9
1,145,632 + +2.0
1,145,634 + -0.2
1,145,757 + +0.1
1,145,761 - +3.1
1,145,919 + +1.2
1,145,929 + +1.1
1,146,039 + -0.9
1,146,051 - +1.4
1,146,494 + 12379 mRNA_4011 0.15 +0.6

Or see this region's nucleotide sequence