Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4025

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12392 and 12393 are separated by 761 nucleotides12393 and 12394 are separated by 138 nucleotides mRNA_4024: 12392 - HMMPfam-Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)-PF10453,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,SMART-zinc finger-SM00356, at 1,183,513 to 1,185,147 12392 mRNA_4025: 12393 - K15634 gpmB probable phosphoglycerate mutase, at 1,185,909 to 1,186,748 12393 mRNA_4026: 12394 - HMMPfam-Cyclin-PF08613, at 1,186,887 to 1,188,212 12394

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,185,513 - -0.2
1,185,542 - +0.5
1,185,544 + +0.9
1,185,545 + +0.2
1,185,551 + +0.0
1,185,839 + +0.5
1,186,091 - 12393 mRNA_4025 0.22 +0.4
1,186,364 - 12393 mRNA_4025 0.54 +2.1
1,186,385 + 12393 mRNA_4025 0.57 +0.4
1,186,644 - 12393 mRNA_4025 0.88 +0.1
1,186,649 + 12393 mRNA_4025 0.88 -0.1
1,186,654 + 12393 mRNA_4025 0.89 +1.0
1,186,793 + +1.7
1,186,798 + +1.9

Or see this region's nucleotide sequence