Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4032

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12400 and 12401 are separated by 269 nucleotides mRNA_4032: 12400 - Hypothetical Protein, at 1,198,442 to 1,200,513 12400 mRNA_4033: 12401 - K17675 SUPV3L1, SUV3 ATP-dependent RNA helicase SUPV3L1/SUV3, at 1,200,783 to 1,202,735 12401

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,197,800 - +0.1
1,198,097 + +0.7
1,198,317 + +0.8
1,198,562 - +1.4
1,198,610 - -2.0
1,198,677 + 12400 mRNA_4032 0.11 +2.6
1,198,714 - 12400 mRNA_4032 0.13 -0.1
1,198,971 - 12400 mRNA_4032 0.26 +1.0
1,199,158 + 12400 mRNA_4032 0.35 -1.7
1,199,171 + 12400 mRNA_4032 0.35 +0.7
1,199,345 - 12400 mRNA_4032 0.44 +1.8
1,199,592 - 12400 mRNA_4032 0.56 +1.0
1,200,307 + -3.1
1,200,460 - +0.0
1,200,463 - +0.8
1,200,569 + +0.2
1,200,753 + +2.4

Or see this region's nucleotide sequence