Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4062

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12429 and 12430 are separated by 580 nucleotides12430 and 12431 are separated by 147 nucleotides mRNA_4061: 12429 - SUPERFAMILY--SSF52540, at 1,260,882 to 1,262,989 12429 mRNA_4062: 12430 - HMMPfam-Protein of unknown function (DUF1115)-PF06544, at 1,263,570 to 1,264,744 12430 mRNA_4063: 12431 - K10777 LIG4, DNL4 DNA ligase 4, at 1,264,892 to 1,269,621 12431

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,262,698 - 12429 mRNA_4061 0.86 +0.7
1,262,727 - 12429 mRNA_4061 0.88 -0.8
1,263,228 - +1.8
1,263,249 - -0.3
1,263,253 - +1.6
1,263,255 + -0.2
1,263,259 + +1.5
1,263,262 - +0.1
1,263,267 + -0.8
1,263,267 + +1.2
1,263,275 + -1.1
1,263,278 + +0.2
1,263,286 - -1.9
1,263,288 + -0.0
1,263,297 + -0.5
1,263,319 - +1.0
1,263,367 - -0.4
1,263,433 - -1.0
1,263,437 - +0.2
1,263,623 - +2.9
1,263,638 - -1.1
1,263,763 + 12430 mRNA_4062 0.16 +0.5
1,263,792 + 12430 mRNA_4062 0.19 -0.3
1,263,805 + 12430 mRNA_4062 0.20 +2.9
1,263,912 - 12430 mRNA_4062 0.29 +0.4
1,263,938 + 12430 mRNA_4062 0.31 +0.4
1,263,938 + 12430 mRNA_4062 0.31 -0.1
1,264,056 - 12430 mRNA_4062 0.41 +1.8
1,264,059 + 12430 mRNA_4062 0.42 +0.8
1,264,189 - 12430 mRNA_4062 0.53 +0.8
1,264,384 + 12430 mRNA_4062 0.69 +0.7
1,264,666 + +0.9
1,264,773 - +2.5
1,264,778 - +0.9
1,264,807 + +1.7
1,264,816 + +0.4
1,264,837 - +1.2
1,264,954 + +0.5
1,264,969 - +0.5
1,264,972 - -2.1
1,264,974 - +3.0
1,265,197 - -0.2

Or see this region's nucleotide sequence