Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4121

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12488 and 12489 are separated by 180 nucleotides12489 and 12490 are separated by 222 nucleotides mRNA_4120: 12488 - Hypothetical Protein, at 1,398,627 to 1,399,035 12488 mRNA_4121: 12489 - KOG3195 Uncharacterized membrane protein NPD008/CGI-148, at 1,399,216 to 1,400,320 12489 mRNA_4122: 12490 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 1,400,543 to 1,402,480 12490

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,398,360 + +2.8
1,398,360 + -0.2
1,398,362 - +0.3
1,398,516 + +2.9
1,398,536 + +0.9
1,398,536 + +3.0
1,398,537 + +0.6
1,398,539 + +0.5
1,398,560 + -1.6
1,398,565 + +0.5
1,398,650 + +1.3
1,398,668 + 12488 mRNA_4120 0.10 +1.8
1,398,684 + 12488 mRNA_4120 0.14 +0.3
1,398,686 + 12488 mRNA_4120 0.14 +0.5
1,398,686 + 12488 mRNA_4120 0.14 -1.0
1,398,691 - 12488 mRNA_4120 0.16 +0.0
1,398,692 - 12488 mRNA_4120 0.16 -0.5
1,398,694 + 12488 mRNA_4120 0.16 +0.8
1,398,705 + 12488 mRNA_4120 0.19 +0.1
1,398,714 + 12488 mRNA_4120 0.21 +0.7
1,398,754 - 12488 mRNA_4120 0.31 +0.7
1,398,840 + 12488 mRNA_4120 0.52 +1.2
1,398,854 - 12488 mRNA_4120 0.56 -1.1
1,398,855 + 12488 mRNA_4120 0.56 +0.1
1,398,855 + 12488 mRNA_4120 0.56 +0.1
1,398,855 - 12488 mRNA_4120 0.56 +1.3
1,398,856 - 12488 mRNA_4120 0.56 +0.3
1,398,857 + 12488 mRNA_4120 0.56 +1.0
1,398,857 + 12488 mRNA_4120 0.56 +1.9
1,398,861 - 12488 mRNA_4120 0.57 +0.0
1,398,861 - 12488 mRNA_4120 0.57 +1.9
1,398,861 + 12488 mRNA_4120 0.57 +0.7
1,398,866 - 12488 mRNA_4120 0.58 +0.1
1,398,874 + 12488 mRNA_4120 0.60 -1.2
1,398,875 + 12488 mRNA_4120 0.61 +0.5
1,398,881 + 12488 mRNA_4120 0.62 +1.1
1,398,882 + 12488 mRNA_4120 0.62 -2.2
1,398,888 + 12488 mRNA_4120 0.64 +0.2
1,398,901 - 12488 mRNA_4120 0.67 +0.3
1,399,007 - +1.7
1,399,007 + +1.5
1,399,015 - +0.9
1,399,024 - +0.7
1,399,029 - +3.6
1,399,031 - +3.2
1,399,056 - +0.5
1,399,057 - -0.6
1,399,134 + +1.2
1,399,135 + -0.2
1,399,140 - -0.1
1,399,147 + +3.5
1,399,325 - -1.0
1,399,444 - 12489 mRNA_4121 0.21 -0.1
1,399,472 + 12489 mRNA_4121 0.23 -0.0
1,399,475 + 12489 mRNA_4121 0.23 +0.8
1,399,483 - 12489 mRNA_4121 0.24 -0.4
1,399,751 - 12489 mRNA_4121 0.48 +0.8
1,399,762 + 12489 mRNA_4121 0.49 +0.3
1,400,076 + 12489 mRNA_4121 0.78 +0.4
1,400,225 + -0.5
1,400,351 - -1.1
1,400,353 - -0.3
1,400,353 - -0.5
1,400,356 + -0.6
1,400,359 + +0.7
1,400,503 + +0.4

Or see this region's nucleotide sequence