Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4192

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12559 and 12560 are separated by 208 nucleotides12560 and 12561 are separated by 309 nucleotides mRNA_4191: 12559 - HMMPfam-GAF domain-PF13492,SMART-Domain present in phytochromes and cGMP-specific phosphodiesterases.-SM00065,SUPERFAMILY--SSF55781, at 1,577,010 to 1,579,239 12559 mRNA_4192: 12560 - K04797 pfdA, PFDN5 prefoldin alpha subunit, at 1,579,448 to 1,580,118 12560 mRNA_4193: 12561 - Hypothetical Protein, at 1,580,428 to 1,584,449 12561

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,578,524 - 12559 mRNA_4191 0.68 +3.2
1,578,529 - 12559 mRNA_4191 0.68 +1.4
1,578,533 + 12559 mRNA_4191 0.68 +1.6
1,578,971 + 12559 mRNA_4191 0.88 +0.7
1,579,205 - +1.2
1,579,228 - -1.5
1,579,233 + +0.8
1,579,248 - -0.3
1,579,381 - -0.0
1,579,407 + -1.0
1,579,502 - -0.3
1,579,543 + 12560 mRNA_4192 0.14 +1.9
1,579,681 - 12560 mRNA_4192 0.35 -2.1
1,580,278 + +0.7
1,580,387 + +0.4
1,580,393 - +0.4
1,580,395 - +1.6
1,580,396 + +2.1
1,580,748 + -0.3
1,580,870 + 12561 mRNA_4193 0.11 -0.3
1,580,871 + 12561 mRNA_4193 0.11 +1.3

Or see this region's nucleotide sequence