Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4226

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12593 and 12594 are separated by 319 nucleotides12594 and 12595 are separated by 207 nucleotides mRNA_4225: 12593 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 1,654,260 to 1,655,493 12593 mRNA_4226: 12594 - K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme, at 1,655,813 to 1,659,134 12594 mRNA_4227: 12595 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF48452, at 1,659,342 to 1,664,294 12595

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,654,928 + 12593 mRNA_4225 0.54 +0.5
1,655,203 - 12593 mRNA_4225 0.76 +0.4
1,655,304 + 12593 mRNA_4225 0.85 +1.1
1,655,307 - 12593 mRNA_4225 0.85 -1.4
1,655,484 + +0.2
1,655,501 - +0.2
1,655,624 + +0.5
1,655,628 + -0.1
1,655,639 + +0.9
1,655,643 + +0.4
1,655,740 - +0.3
1,655,821 - -1.7
1,655,838 - +1.3
1,656,070 + +0.1
1,656,082 - +0.1
1,656,220 + 12594 mRNA_4226 0.12 +0.2
1,656,230 + 12594 mRNA_4226 0.13 -0.1
1,656,231 - 12594 mRNA_4226 0.13 -1.3
1,656,231 + 12594 mRNA_4226 0.13 +1.1
1,656,389 + 12594 mRNA_4226 0.17 -2.2
1,656,505 - 12594 mRNA_4226 0.21 -0.4
1,656,562 - 12594 mRNA_4226 0.23 +0.5
1,656,654 + 12594 mRNA_4226 0.25 +0.0
1,656,985 + 12594 mRNA_4226 0.35 -2.0
1,656,988 - 12594 mRNA_4226 0.35 -1.1
1,657,128 + 12594 mRNA_4226 0.40 +1.8
1,657,308 + 12594 mRNA_4226 0.45 +0.7
1,657,520 - 12594 mRNA_4226 0.51 -1.3
1,657,525 + 12594 mRNA_4226 0.52 -0.5
1,657,527 - 12594 mRNA_4226 0.52 +1.2
1,657,797 - 12594 mRNA_4226 0.60 -2.1
1,658,412 + 12594 mRNA_4226 0.78 -0.2
1,658,482 + 12594 mRNA_4226 0.80 -0.1
1,658,507 - 12594 mRNA_4226 0.81 +0.0
1,658,511 + 12594 mRNA_4226 0.81 -0.6
1,658,523 + 12594 mRNA_4226 0.82 -1.3
1,658,574 + 12594 mRNA_4226 0.83 +1.7
1,658,661 - 12594 mRNA_4226 0.86 -0.2
1,658,668 + 12594 mRNA_4226 0.86 +1.2
1,658,835 - +0.4
1,658,843 - +0.1
1,658,856 - -0.7
1,658,959 - +0.1
1,658,979 - -1.3
1,658,982 + +0.1
1,659,044 + +0.2
1,659,118 + -0.5
1,659,158 + +0.5
1,659,158 + +0.0
1,659,275 + +1.0
1,659,478 + +0.9
1,659,901 + 12595 mRNA_4227 0.11 +1.9

Or see this region's nucleotide sequence