Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4228

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12595 and 12596 are separated by 54 nucleotides12596 and 12597 are separated by 153 nucleotides mRNA_4227: 12595 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF48452, at 1,659,342 to 1,664,294 12595 mRNA_4228: 12596 - K00995 pgsA, PGS1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,664,349 to 1,666,570 12596 mRNA_4229: 12597 - K03145 TFIIS transcription elongation factor S-II, at 1,666,724 to 1,668,318 12597

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,663,540 - 12595 mRNA_4227 0.85 +0.9
1,663,607 - 12595 mRNA_4227 0.86 +0.6
1,663,698 + 12595 mRNA_4227 0.88 +0.8
1,663,988 - +1.4
1,664,095 - -0.4
1,664,115 - +1.0
1,664,159 + +3.3
1,664,201 - -0.4
1,664,275 - -0.0
1,664,297 + -2.3
1,664,380 + +0.7
1,664,397 - -0.4
1,664,439 + +0.2

Or see this region's nucleotide sequence