Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4243

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12610 and 12611 are separated by 607 nucleotides12611 and 12612 are separated by 114 nucleotides mRNA_4242: 12610 - K02985 RP-S3e, RPS3 small subunit ribosomal protein S3e, at 1,696,957 to 1,698,115 12610 mRNA_4243: 12611 - HMMPfam-F-box-like-PF12937, at 1,698,723 to 1,700,079 12611 mRNA_4244: 12612 - Hypothetical Protein, at 1,700,194 to 1,701,109 12612

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,698,641 - -1.4
1,698,648 - +0.8
1,698,658 + +1.4
1,698,661 - +0.1
1,698,696 - +2.9
1,698,829 + -0.1
1,698,989 + 12611 mRNA_4243 0.20 -0.5
1,699,257 + 12611 mRNA_4243 0.39 -0.6
1,699,285 - 12611 mRNA_4243 0.41 +1.6
1,699,440 - 12611 mRNA_4243 0.53 +1.4
1,699,551 - 12611 mRNA_4243 0.61 +1.5
1,700,114 + +0.0
1,700,131 + +0.0
1,700,154 + +1.1
1,700,407 + 12612 mRNA_4244 0.23 +0.6
1,700,527 - 12612 mRNA_4244 0.36 +0.5
1,700,549 - 12612 mRNA_4244 0.39 +0.1
1,700,565 + 12612 mRNA_4244 0.41 -1.1
1,700,588 - 12612 mRNA_4244 0.43 -0.6
1,700,733 + 12612 mRNA_4244 0.59 +1.1
1,700,860 + 12612 mRNA_4244 0.73 +1.1

Or see this region's nucleotide sequence