Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4248

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12615 and 12616 are separated by 170 nucleotides12616 and 12617 are separated by 617 nucleotides mRNA_4247: 12615 - KOG3188 Uncharacterized conserved protein, at 1,705,366 to 1,706,539 12615 mRNA_4248: 12616 - K17764 MMM1 maintenance of mitochondrial morphology protein 1, at 1,706,710 to 1,708,657 12616 mRNA_4249: 12617 - K10436 MAPRE microtubule-associated protein, RP/EB family, at 1,709,275 to 1,710,811 12617

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,706,012 + 12615 mRNA_4247 0.55 +2.9
1,706,165 - 12615 mRNA_4247 0.68 +0.0
1,706,611 + +2.1
1,708,646 - +1.0
1,708,647 + -0.9
1,708,816 - +0.3
1,708,837 + +0.2
1,709,005 - -1.4
1,709,383 + +1.9

Or see this region's nucleotide sequence