Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4251

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12618 and 12619 are separated by 453 nucleotides12619 and 12620 are separated by 65 nucleotides mRNA_4250: 12618 - K08956 AFG3 AFG3 family protein, at 1,711,024 to 1,714,296 12618 mRNA_4251: 12619 - K07560 dtd, DTD1 D-tyrosyl-tRNA(Tyr) deacylase, at 1,714,750 to 1,715,768 12619 mRNA_4252: 12620 - HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118, at 1,715,834 to 1,717,453 12620

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,714,252 - -0.5
1,714,516 - +2.5
1,714,567 - -0.1
1,714,703 + -0.8
1,714,851 + +0.6
1,714,852 + 12619 mRNA_4251 0.10 +0.3
1,714,856 + 12619 mRNA_4251 0.10 +0.5
1,714,877 - 12619 mRNA_4251 0.12 +1.6
1,714,931 - 12619 mRNA_4251 0.18 -0.9
1,715,148 - 12619 mRNA_4251 0.39 +2.4
1,715,426 - 12619 mRNA_4251 0.66 +0.0
1,715,592 + 12619 mRNA_4251 0.83 +0.4
1,715,613 - 12619 mRNA_4251 0.85 +2.6
1,715,884 + -0.1
1,716,434 + 12620 mRNA_4252 0.37 +0.1

Or see this region's nucleotide sequence