Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4301

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12669 and 12670 are separated by 193 nucleotides mRNA_4301: 12669 - Hypothetical Protein, at 1,840,764 to 1,841,675 12669 mRNA_4302: 12670 - K07819 B3GALT1 beta-1,3-galactosyltransferase 1, at 1,841,869 to 1,845,358 12670

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,839,836 - +1.8
1,839,848 + -0.0
1,839,870 - +0.8
1,840,330 - -0.1
1,840,761 + +0.3
1,841,128 + 12669 mRNA_4301 0.40 -0.6
1,841,250 + 12669 mRNA_4301 0.53 +1.0
1,841,338 + 12669 mRNA_4301 0.63 -0.8
1,841,614 - -0.7
1,841,623 + +2.2
1,842,207 + -0.2
1,842,510 - 12670 mRNA_4302 0.18 +1.2

Or see this region's nucleotide sequence