Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4308

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12675 and 12676 are separated by 467 nucleotides12676 and 12677 are separated by 428 nucleotides mRNA_4307: 12675 - Hypothetical Protein, at 1,861,976 to 1,862,718 12675 mRNA_4308: 12676 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1,863,186 to 1,865,063 12676 mRNA_4309: 12677 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 1,865,492 to 1,868,533 12677

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,862,195 - 12675 mRNA_4307 0.29 +0.0
1,862,199 + 12675 mRNA_4307 0.30 +1.3
1,862,209 - 12675 mRNA_4307 0.31 +0.3
1,862,212 + 12675 mRNA_4307 0.32 +0.3
1,862,214 + 12675 mRNA_4307 0.32 +0.5
1,862,216 - 12675 mRNA_4307 0.32 -0.4
1,862,217 + 12675 mRNA_4307 0.32 -2.5
1,862,218 + 12675 mRNA_4307 0.33 +0.7
1,862,218 - 12675 mRNA_4307 0.33 -0.1
1,862,219 - 12675 mRNA_4307 0.33 +0.0
1,862,224 - 12675 mRNA_4307 0.33 -0.9
1,862,226 + 12675 mRNA_4307 0.34 -0.4
1,862,234 + 12675 mRNA_4307 0.35 +2.2
1,862,236 - 12675 mRNA_4307 0.35 +0.1
1,862,237 + 12675 mRNA_4307 0.35 -0.8
1,862,240 - 12675 mRNA_4307 0.36 -0.5
1,862,240 + 12675 mRNA_4307 0.36 +0.4
1,862,248 - 12675 mRNA_4307 0.37 +0.7
1,862,253 - 12675 mRNA_4307 0.37 +0.3
1,862,253 - 12675 mRNA_4307 0.37 +1.9
1,862,253 - 12675 mRNA_4307 0.37 -0.3
1,862,295 - 12675 mRNA_4307 0.43 +0.1
1,862,298 + 12675 mRNA_4307 0.43 +0.3
1,862,311 + 12675 mRNA_4307 0.45 +1.2
1,862,322 - 12675 mRNA_4307 0.47 -0.6
1,862,332 - 12675 mRNA_4307 0.48 -0.2
1,862,332 + 12675 mRNA_4307 0.48 +1.7
1,862,334 - 12675 mRNA_4307 0.48 +3.4
1,862,337 + 12675 mRNA_4307 0.49 +1.6
1,862,338 + 12675 mRNA_4307 0.49 -0.4
1,862,340 - 12675 mRNA_4307 0.49 +0.0
1,862,341 - 12675 mRNA_4307 0.49 +0.2
1,862,343 + 12675 mRNA_4307 0.49 +0.2
1,862,343 + 12675 mRNA_4307 0.49 +0.0
1,862,346 + 12675 mRNA_4307 0.50 +0.0
1,862,348 + 12675 mRNA_4307 0.50 -0.1
1,862,354 - 12675 mRNA_4307 0.51 -0.3
1,862,354 - 12675 mRNA_4307 0.51 -0.5
1,862,357 - 12675 mRNA_4307 0.51 +0.9
1,862,364 + 12675 mRNA_4307 0.52 -0.3
1,862,364 + 12675 mRNA_4307 0.52 +0.8
1,862,365 + 12675 mRNA_4307 0.52 -0.8
1,862,367 - 12675 mRNA_4307 0.53 +1.0
1,862,368 + 12675 mRNA_4307 0.53 -1.4
1,862,369 + 12675 mRNA_4307 0.53 +1.8
1,862,370 + 12675 mRNA_4307 0.53 +0.6
1,862,378 - 12675 mRNA_4307 0.54 -0.3
1,862,380 + 12675 mRNA_4307 0.54 +1.0
1,862,380 + 12675 mRNA_4307 0.54 +0.1
1,862,386 + 12675 mRNA_4307 0.55 +0.7
1,862,391 + 12675 mRNA_4307 0.56 -1.0
1,862,394 + 12675 mRNA_4307 0.56 +0.2
1,862,401 - 12675 mRNA_4307 0.57 +0.4
1,862,406 - 12675 mRNA_4307 0.58 +0.4
1,862,436 - 12675 mRNA_4307 0.62 +1.8
1,862,448 + 12675 mRNA_4307 0.64 -0.6
1,862,474 + 12675 mRNA_4307 0.67 +0.4
1,862,523 - 12675 mRNA_4307 0.74 -3.1
1,862,524 + 12675 mRNA_4307 0.74 -1.7
1,862,530 + 12675 mRNA_4307 0.75 +3.4
1,862,547 + 12675 mRNA_4307 0.77 +0.6
1,862,551 - 12675 mRNA_4307 0.77 -0.1
1,862,592 + 12675 mRNA_4307 0.83 -2.5
1,862,595 - 12675 mRNA_4307 0.83 +1.6
1,862,603 - 12675 mRNA_4307 0.84 +2.4
1,862,604 - 12675 mRNA_4307 0.85 +0.1
1,862,606 + 12675 mRNA_4307 0.85 +1.7
1,862,649 + +0.1
1,862,680 + -0.6
1,862,702 + +2.4
1,862,710 + +0.8
1,862,713 + +0.4
1,862,719 + -0.1
1,862,721 - -0.0
1,862,744 - -0.1
1,862,749 - +1.4
1,862,762 + +2.2
1,862,763 + +1.2
1,862,772 - +2.2
1,862,866 - +0.5
1,862,873 - +0.1
1,862,888 + -0.5
1,862,891 + +0.2
1,862,916 + +0.3
1,862,924 - +1.1
1,862,928 + +0.9
1,862,931 - +2.9
1,862,934 - +0.0
1,862,950 - +0.3
1,862,966 - +1.3
1,863,088 - -0.4
1,863,186 - +0.1
1,863,631 - 12676 mRNA_4308 0.24 -0.8
1,863,634 + 12676 mRNA_4308 0.24 +1.5
1,863,647 - 12676 mRNA_4308 0.25 +0.7
1,864,072 + 12676 mRNA_4308 0.47 +1.0
1,864,088 + 12676 mRNA_4308 0.48 -0.7
1,864,236 + 12676 mRNA_4308 0.56 +1.7
1,864,368 - 12676 mRNA_4308 0.63 -0.0
1,864,946 + +0.3
1,864,963 + +0.1
1,865,082 + -0.3
1,865,088 - -0.1
1,865,092 - -0.3
1,865,093 - -0.3
1,865,096 - +1.7
1,865,109 + -0.8
1,865,109 - +0.2
1,865,110 + +0.9
1,865,111 + +0.5
1,865,130 - +0.1
1,865,150 + -1.1
1,865,150 - +1.0
1,865,151 + +0.7
1,865,158 - +0.2
1,865,160 + +1.2
1,865,193 + +0.1
1,865,195 - +2.7
1,865,201 + +0.3
1,865,201 + +0.3
1,865,205 + -0.7
1,865,221 + -0.8
1,865,230 - +2.5
1,865,231 + +0.3
1,865,335 - +1.4
1,865,340 - +3.2
1,865,363 - -0.2
1,865,364 + +0.5
1,865,509 - +0.9

Or see this region's nucleotide sequence