Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4331

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12698 and 12699 are separated by 221 nucleotides12699 and 12700 are separated by 387 nucleotides mRNA_4330: 12698 - K18738 HEK2, KHD1 heterogeneous nuclear rnp K-like protein 2, at 1,925,709 to 1,927,416 12698 mRNA_4331: 12699 - K15262 BCP1, BCCIP protein BCP1, at 1,927,638 to 1,928,975 12699 mRNA_4332: 12700 - K02912 RP-L32e, RPL32 large subunit ribosomal protein L32e, at 1,929,363 to 1,930,179 12700

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,927,027 + 12698 mRNA_4330 0.77 -2.5
1,927,064 - 12698 mRNA_4330 0.79 -0.8
1,927,189 - 12698 mRNA_4330 0.87 -1.2
1,927,190 + 12698 mRNA_4330 0.87 -0.1
1,927,495 - +1.0
1,927,515 - -0.2
1,927,520 + -0.2
1,927,583 + -1.1
1,929,040 + -1.8
1,929,040 - +0.4
1,929,048 + -0.3
1,929,171 - +0.1
1,929,185 - +0.8
1,929,186 + -0.4
1,929,186 + -1.0
1,929,309 + -1.4

Or see this region's nucleotide sequence