Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4369

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12737 and 12738 are separated by 405 nucleotides mRNA_4369: 12737 - K03671 trxA thioredoxin 1, at 29,253 to 29,815 12737 mRNA_4370: 12738 - HMMPfam-Purine nucleoside permease (NUP)-PF06516,PIRSF--PIRSF013171, at 30,221 to 32,027 12738

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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28,357 - +2.2
28,362 + -0.5
28,481 + +1.2
28,533 + +2.8
28,680 + +0.7
28,784 - +0.4
28,862 - -1.5
28,867 + -1.0
28,867 + -0.5
28,870 - +1.2
28,878 - +0.4
29,035 - +0.5
29,094 + -0.2
29,103 + +3.0
29,218 - +1.2
29,668 - 12737 mRNA_4369 0.74 -0.5
29,839 + +1.2
30,499 - 12738 mRNA_4370 0.15 +0.8
30,508 - 12738 mRNA_4370 0.16 -0.1

Or see this region's nucleotide sequence