Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4420

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12787 and 12788 are separated by 599 nucleotides12788 and 12789 are separated by 125 nucleotides mRNA_4419: 12787 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 139,865 to 142,182 12787 mRNA_4420: 12788 - Hypothetical Protein, at 142,782 to 144,296 12788 mRNA_4421: 12789 - K17765 MDM12 mitochondrial distribution and morphology protein 12, at 144,422 to 145,671 12789

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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142,307 + +0.8
142,356 - +0.7
142,405 - -0.4
142,412 + +1.2
142,487 + +1.0
142,562 + +1.0
142,622 + -0.8
142,628 - +0.9
142,727 - -1.2
143,182 + 12788 mRNA_4420 0.26 -1.4
143,182 + 12788 mRNA_4420 0.26 +0.1
143,183 - 12788 mRNA_4420 0.26 +0.4
143,185 + 12788 mRNA_4420 0.27 +0.6
143,207 + 12788 mRNA_4420 0.28 +0.9
143,214 - 12788 mRNA_4420 0.29 -0.4
143,368 + 12788 mRNA_4420 0.39 +0.1
143,371 - 12788 mRNA_4420 0.39 -0.6
143,440 + 12788 mRNA_4420 0.43 +2.0
143,486 - 12788 mRNA_4420 0.46 +1.3
143,644 - 12788 mRNA_4420 0.57 +2.2
143,784 + 12788 mRNA_4420 0.66 -0.4
143,797 - 12788 mRNA_4420 0.67 +0.3
144,073 - 12788 mRNA_4420 0.85 -1.4
144,090 - 12788 mRNA_4420 0.86 -1.7
144,115 - 12788 mRNA_4420 0.88 -1.0
144,234 + +0.7
144,373 + +2.7
144,383 - -0.5

Or see this region's nucleotide sequence