Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4430

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12797 and 12798 are separated by 389 nucleotides12798 and 12799 are separated by 247 nucleotides mRNA_4429: 12797 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 164,549 to 166,627 12797 mRNA_4430: 12798 - KOG0322 G-protein beta subunit-like protein GNB1L, contains WD repeats, at 167,017 to 168,895 12798 mRNA_4431: 12799 - Hypothetical Protein, at 169,143 to 170,784 12799

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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166,071 - 12797 mRNA_4429 0.73 -1.2
166,081 + 12797 mRNA_4429 0.74 -0.8
166,081 + 12797 mRNA_4429 0.74 +0.0
166,174 - 12797 mRNA_4429 0.78 +0.5
166,217 - 12797 mRNA_4429 0.80 +1.7
166,223 - 12797 mRNA_4429 0.81 +0.1
166,225 - 12797 mRNA_4429 0.81 +0.3
166,382 + 12797 mRNA_4429 0.88 -0.7
166,494 + +1.3
166,526 + +1.6
166,527 + -0.1
166,595 + -0.4
166,646 - +3.8
166,693 - -1.5
166,779 - +1.3
166,787 - -0.4
166,790 - -1.5
166,807 - +0.3
166,817 + +0.2
166,966 - +0.7
168,949 - +0.8
168,982 + -0.5
169,034 + +0.6
169,108 - -0.5
169,125 + +0.3
169,128 - -0.2
169,166 - +0.4
169,170 - -2.5
169,381 + 12799 mRNA_4431 0.14 +0.7
169,413 - 12799 mRNA_4431 0.16 -1.9
169,542 - 12799 mRNA_4431 0.24 +0.0
169,546 + 12799 mRNA_4431 0.25 +1.2
169,548 - 12799 mRNA_4431 0.25 +0.1
169,563 - 12799 mRNA_4431 0.26 +0.5
169,840 + 12799 mRNA_4431 0.42 -0.4

Or see this region's nucleotide sequence