Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4435

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12802 and 12803 are separated by 328 nucleotides12803 and 12804 are separated by 384 nucleotides mRNA_4434: 12802 - Hypothetical Protein, at 173,959 to 175,087 12802 mRNA_4435: 12803 - KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains, at 175,416 to 177,921 12803 mRNA_4436: 12804 - Hypothetical Protein, at 178,306 to 178,939 12804

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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174,703 + 12802 mRNA_4434 0.66 +1.5
174,773 - 12802 mRNA_4434 0.72 -1.8
174,907 - 12802 mRNA_4434 0.84 -0.9
174,915 + 12802 mRNA_4434 0.85 -0.3
174,941 - 12802 mRNA_4434 0.87 +0.2
174,947 + 12802 mRNA_4434 0.88 +0.4
175,090 + +0.3
175,090 - -2.0
175,218 + -0.3
175,223 + -0.2
175,390 + +1.8
175,485 + -0.1
175,544 - +1.4
175,554 + +0.6
175,667 - 12803 mRNA_4435 0.10 +1.8
175,815 + 12803 mRNA_4435 0.16 +0.5
175,945 + 12803 mRNA_4435 0.21 +1.4
176,517 + 12803 mRNA_4435 0.44 +1.2
176,528 + 12803 mRNA_4435 0.44 +0.8
176,801 - 12803 mRNA_4435 0.55 -1.2
176,934 - 12803 mRNA_4435 0.61 +2.1
177,166 + 12803 mRNA_4435 0.70 +0.4
177,346 - 12803 mRNA_4435 0.77 -0.0
177,376 - 12803 mRNA_4435 0.78 +1.4
177,421 - 12803 mRNA_4435 0.80 -1.8
177,436 + 12803 mRNA_4435 0.81 -0.5
177,454 + 12803 mRNA_4435 0.81 +1.6
177,684 - +0.3
177,735 + -0.3
177,743 + +0.1
178,129 + +1.3
178,180 - +2.4
178,275 + +0.5
178,278 - +0.1
178,309 - +0.5
178,315 - +0.5
178,320 - +0.8
178,320 - +0.0
178,322 + -1.0
178,324 + -0.5
178,335 + +0.2
178,341 + +1.3
178,347 + +1.5
178,358 - -0.7
178,381 - 12804 mRNA_4436 0.12 +2.7
178,385 - 12804 mRNA_4436 0.12 -1.9
178,488 + 12804 mRNA_4436 0.29 +1.4
178,622 - 12804 mRNA_4436 0.50 +0.3
178,627 + 12804 mRNA_4436 0.51 +1.7
178,736 + 12804 mRNA_4436 0.68 +0.9
178,820 + 12804 mRNA_4436 0.81 +0.9
178,867 + 12804 mRNA_4436 0.88 -1.3
178,884 + -1.5
178,885 - +0.9

Or see this region's nucleotide sequence