Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4449

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12816 and 12817 are separated by 90 nucleotides12817 and 12818 are separated by 186 nucleotides mRNA_4448: 12816 - KOG3979 FGF receptor activating protein 1, at 206,220 to 210,253 12816 mRNA_4449: 12817 - K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1, at 210,344 to 212,336 12817 mRNA_4450: 12818 - Hypothetical Protein, at 212,523 to 213,518 12818

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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209,569 - 12816 mRNA_4448 0.83 +2.5
209,606 + 12816 mRNA_4448 0.84 +0.9
209,864 - -0.2
209,980 + -0.3
209,986 + -1.8
209,996 - +0.6
210,013 + +0.3
210,024 + +0.6
210,032 + +0.8
210,335 + -1.2
210,615 - 12817 mRNA_4449 0.14 +0.4
210,779 - 12817 mRNA_4449 0.22 +1.8
210,908 - 12817 mRNA_4449 0.28 +0.8
211,048 - 12817 mRNA_4449 0.35 +0.5
211,362 + 12817 mRNA_4449 0.51 -0.0
211,366 - 12817 mRNA_4449 0.51 -0.8
211,467 - 12817 mRNA_4449 0.56 +1.2
211,467 + 12817 mRNA_4449 0.56 -0.1
211,898 - 12817 mRNA_4449 0.78 +0.3
211,916 - 12817 mRNA_4449 0.79 +0.2
212,084 + 12817 mRNA_4449 0.87 -0.2
212,153 + -0.5
212,172 - -0.0
212,277 - +0.2
212,780 - 12818 mRNA_4450 0.26 -1.5
213,203 + 12818 mRNA_4450 0.68 +0.3
213,206 + 12818 mRNA_4450 0.69 +0.7
213,216 - 12818 mRNA_4450 0.70 +0.1

Or see this region's nucleotide sequence