Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4487

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12854 and 12855 are separated by 719 nucleotides12855 and 12856 are separated by 336 nucleotides mRNA_4486: 12854 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 296,577 to 298,255 12854 mRNA_4487: 12855 - K05857 PLCD phosphatidylinositol phospholipase C, delta, at 298,975 to 301,181 12855 mRNA_4488: 12856 - BLAST phospholipase C [Moesziomyces antarcticus T-34], at 301,518 to 302,496 12856

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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298,467 + +1.9
298,488 + +1.3
298,752 - -0.1
298,752 + -0.5
298,755 - -0.8
298,761 - +0.9
298,774 - +0.4
298,791 + +0.1
298,798 - -0.6
298,803 - +1.6
298,811 - +0.9
298,812 + +0.6
298,826 - +1.2
298,921 - +0.3
300,347 - 12855 mRNA_4487 0.62 +1.5

Or see this region's nucleotide sequence