Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4505

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12872 and 12873 are separated by 63 nucleotides12873 and 12874 overlap by 2 nucleotides mRNA_4504: 12872 - Hypothetical Protein, at 338,393 to 338,917 12872 mRNA_4505: 12873 - K18172 CMC2 COX assembly mitochondrial protein 2, at 338,981 to 339,395 12873 mRNA_4506: 12874 - KOG4754 Predicted phosphoglycerate mutase, at 339,394 to 340,797 12874

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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338,090 - +0.0
338,237 - -1.0
338,243 - -1.8
338,248 + +1.3
338,279 + +1.4
338,400 - -0.9
338,402 - +0.0
338,412 + +0.7
338,422 + -0.2
338,682 + 12872 mRNA_4504 0.55 +2.5
338,699 + 12872 mRNA_4504 0.58 -1.1
338,699 + 12872 mRNA_4504 0.58 +1.0
339,130 - 12873 mRNA_4505 0.36 +3.2
339,137 - 12873 mRNA_4505 0.38 -0.1
339,142 + 12873 mRNA_4505 0.39 -0.9
339,154 - 12873 mRNA_4505 0.42 +1.7
339,261 - 12873 mRNA_4505 0.67 +1.2
339,274 + 12873 mRNA_4505 0.71 +0.1
339,279 - 12873 mRNA_4505 0.72 +2.5
339,421 + +0.6
339,446 - -0.3
339,465 + +1.2
339,579 - 12874 mRNA_4506 0.13 -0.9
339,732 + 12874 mRNA_4506 0.24 -0.0
339,887 + 12874 mRNA_4506 0.35 -0.2
340,011 + 12874 mRNA_4506 0.44 -0.5
340,045 + 12874 mRNA_4506 0.46 -2.3
340,149 - 12874 mRNA_4506 0.54 +2.8
340,205 - 12874 mRNA_4506 0.58 +0.1

Or see this region's nucleotide sequence