Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4536

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12903 and 12904 are separated by 580 nucleotides12904 and 12905 are separated by 375 nucleotides mRNA_4535: 12903 - Hypothetical Protein, at 402,768 to 403,548 12903 mRNA_4536: 12904 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 404,129 to 405,942 12904 mRNA_4537: 12905 - KOG0472 Leucine-rich repeat protein, at 406,318 to 409,422 12905

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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403,334 + 12903 mRNA_4535 0.72 +0.8
403,442 - 12903 mRNA_4535 0.86 -0.4
404,314 + 12904 mRNA_4536 0.10 -1.2
404,463 + 12904 mRNA_4536 0.18 +0.1
405,161 - 12904 mRNA_4536 0.57 +0.2
405,313 + 12904 mRNA_4536 0.65 +0.9
405,396 + 12904 mRNA_4536 0.70 -0.1
405,893 + -0.2
405,898 - -0.9
405,907 + -0.3
406,069 + +0.7
406,200 + +1.7
406,200 + +0.3
406,350 + -0.5
406,800 + 12905 mRNA_4537 0.16 +1.6

Or see this region's nucleotide sequence