Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4577

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12944 and 12945 are separated by 751 nucleotides12945 and 12946 are separated by 680 nucleotides mRNA_4576: 12944 - K00787 FDPS farnesyl diphosphate synthase, at 502,452 to 503,977 12944 mRNA_4577: 12945 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 504,729 to 505,838 12945 mRNA_4578: 12946 - Hypothetical Protein, at 506,519 to 507,162 12946

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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504,044 - +0.7
504,197 - +0.1
504,325 + +2.9
504,376 + -0.4
504,465 - +0.8
504,489 + +0.9
504,496 + +1.8
504,511 + +1.6
504,516 - +0.4
504,523 + +1.5
504,523 - +2.4
504,525 - +0.0
504,529 + +0.8
504,529 - +0.5
504,537 + -0.7
504,538 - +0.4
504,538 + +0.2
504,543 - -0.3
504,545 - -0.2
504,546 + +1.2
504,549 - -0.3
504,550 + +0.7
504,551 - -0.2
504,557 + +0.5
504,558 - -0.4
504,559 - +2.2
504,560 - +0.4
504,561 + +3.3
504,562 - +0.4
504,563 - +1.6
504,564 + -0.1
504,565 + +0.5
504,566 - +1.9
504,567 - +0.5
504,572 + -1.5
504,574 - +0.6
504,575 + +1.6
504,580 + -0.2
504,585 + -0.2
504,594 + +0.1
504,601 + -0.3
504,617 - +1.4
504,642 + +2.5
504,646 + +0.9
504,648 - +1.1
504,649 - +1.0
504,653 + -0.4
504,655 + +0.3
504,655 - +1.5
504,655 - -0.2
504,661 + +0.9
504,675 - +0.4
504,676 + +2.8
504,676 + -0.1
504,679 - +0.9
504,682 + +0.5
504,850 + 12945 mRNA_4577 0.11 +2.3
504,973 + 12945 mRNA_4577 0.22 +1.6
504,975 - 12945 mRNA_4577 0.22 -1.5
504,975 - 12945 mRNA_4577 0.22 -0.3
504,976 + 12945 mRNA_4577 0.22 -1.6
504,976 + 12945 mRNA_4577 0.22 -1.0
504,977 + 12945 mRNA_4577 0.22 +0.5
504,979 - 12945 mRNA_4577 0.23 +2.2
504,980 + 12945 mRNA_4577 0.23 +0.5
505,001 - 12945 mRNA_4577 0.25 -0.1
505,097 - 12945 mRNA_4577 0.33 +2.1
505,113 + 12945 mRNA_4577 0.35 +0.4
505,127 + 12945 mRNA_4577 0.36 +0.3
505,147 + 12945 mRNA_4577 0.38 +1.0
505,165 + 12945 mRNA_4577 0.39 +1.0
505,223 + 12945 mRNA_4577 0.45 -0.4
505,293 - 12945 mRNA_4577 0.51 +1.6
505,305 + 12945 mRNA_4577 0.52 +2.6
505,423 - 12945 mRNA_4577 0.63 -0.4
505,459 - 12945 mRNA_4577 0.66 +0.6
505,586 + 12945 mRNA_4577 0.77 +1.1
505,686 + 12945 mRNA_4577 0.86 +1.9
505,727 - 12945 mRNA_4577 0.90 +0.3
505,992 - -0.2
506,054 + -0.4
506,118 + +0.6
506,141 + +0.3
506,214 - +1.5
506,231 + +2.0
506,276 + -1.4
506,277 - +0.2
506,279 - +0.1
506,304 + +0.2
506,304 + +0.2
506,306 + +0.8
506,427 + +1.5

Or see this region's nucleotide sequence