Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4580

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12948 and 12949 are separated by 265 nucleotides mRNA_4580: 12948 - Hypothetical Protein, at 512,384 to 513,483 12948 mRNA_4581: 12949 - K17964 LRPPRC leucine-rich PPR motif-containing protein, mitochondrial, at 513,749 to 516,613 12949

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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511,394 - +1.3
511,413 - +1.5
511,424 + +1.4
511,425 + +0.4
511,537 - +0.8
511,538 - +0.2
511,586 - -1.3
511,690 - -0.1
511,842 - -0.2
511,852 - -0.1
512,140 - -0.4
512,140 + -0.3
512,145 - +2.5
512,155 + +0.5
512,271 - +0.3
512,290 - +1.1
512,290 - -0.0
512,297 - +1.2
512,302 - +0.3
512,318 - +0.0
512,443 - +0.2
512,483 - +1.1
512,743 + 12948 mRNA_4580 0.33 -1.3
513,329 - 12948 mRNA_4580 0.86 +1.4
513,348 + 12948 mRNA_4580 0.88 +0.0
513,465 + -1.2

Or see this region's nucleotide sequence