Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4593

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12960 and 12961 are separated by 820 nucleotides12961 and 12962 are separated by 114 nucleotides mRNA_4592: 12960 - K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A, at 541,515 to 545,296 12960 mRNA_4593: 12961 - K05286 PIGB phosphatidylinositol glycan, class B, at 546,117 to 548,213 12961 mRNA_4594: 12962 - K19589 N6AMT1 release factor glutamine methyltransferase, at 548,328 to 549,291 12962

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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545,305 + +0.5
545,462 - -2.3
545,665 + +0.4
545,706 + +3.0
545,751 - +1.7
545,752 + +0.2
545,760 + -0.6
545,763 + -1.1
545,777 - +2.2
545,839 - +1.0
545,941 - -0.8
545,960 + +0.1
545,969 - +1.9
545,976 + -0.2
545,991 - -0.7
545,991 - +0.1
546,112 + +2.0

Or see this region's nucleotide sequence