Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4598

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12965 and 12966 are separated by 581 nucleotides12966 and 12967 are separated by 77 nucleotides mRNA_4597: 12965 - K01836 PGM3 phosphoacetylglucosamine mutase, at 551,838 to 553,839 12965 mRNA_4598: 12966 - K00418 QCR8, UQCRQ ubiquinol-cytochrome c reductase subunit 8, at 554,421 to 554,905 12966 mRNA_4599: 12967 - K12820 DHX15, PRP43 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43, at 554,983 to 558,487 12967

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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553,831 - +0.2
553,864 - +0.6
554,006 - -1.4
554,125 + +0.4
554,125 + +1.7
554,126 + +0.9
554,140 - -0.3
554,143 + +1.9
554,148 + +1.2
554,149 - +1.0
554,167 + -2.3
554,422 - +0.8

Or see this region's nucleotide sequence