Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4600

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12967 and 12968 are separated by 97 nucleotides12968 and 12969 are separated by 115 nucleotides mRNA_4599: 12967 - K12820 DHX15, PRP43 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43, at 554,983 to 558,487 12967 mRNA_4600: 12968 - K08343 ATG3 ubiquitin-like-conjugating enzyme ATG3, at 558,585 to 560,759 12968 mRNA_4601: 12969 - HMMPfam-Sen15 protein-PF09631,SUPERFAMILY--SSF53032, at 560,875 to 561,580 12969

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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558,354 - -1.1
558,358 - -0.2
558,499 - +2.2
558,523 + +0.2
558,533 - -0.1
558,795 - +3.5
558,832 + 12968 mRNA_4600 0.11 +3.1
559,087 - 12968 mRNA_4600 0.23 +2.1
559,390 - 12968 mRNA_4600 0.37 +3.8
559,409 - 12968 mRNA_4600 0.38 +1.4
559,571 + 12968 mRNA_4600 0.45 +1.4
559,814 - 12968 mRNA_4600 0.57 +2.3
559,819 + 12968 mRNA_4600 0.57 +0.9
559,905 - 12968 mRNA_4600 0.61 +0.5
560,080 - 12968 mRNA_4600 0.69 -0.3
560,223 - 12968 mRNA_4600 0.75 -0.0
560,541 + 12968 mRNA_4600 0.90 +0.8
560,661 + +0.2
560,690 - +0.6
560,846 - -0.9
560,849 + +1.1
560,860 + +1.6
561,582 - -0.7
561,633 - -0.1
561,698 - -0.5
561,705 + +0.8
561,711 + -0.2
561,734 - +3.5

Or see this region's nucleotide sequence