Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4617

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12984 and 12985 are separated by 669 nucleotides mRNA_4616: 12984 - Hypothetical Protein, at 605,227 to 605,994 12984 mRNA_4617: 12985 - Hypothetical Protein, at 606,664 to 607,161 12985

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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605,990 - -0.4
606,150 - +0.2
606,152 - +1.0
606,156 - +0.2
606,156 - -0.9
606,172 + -0.2
606,308 - -0.2
606,345 - +1.1
606,880 - 12985 mRNA_4617 0.43 -1.5
607,016 - 12985 mRNA_4617 0.71 -1.5
607,028 - 12985 mRNA_4617 0.73 -0.3
607,037 - 12985 mRNA_4617 0.75 -2.0
607,051 + 12985 mRNA_4617 0.78 -0.5

Or see this region's nucleotide sequence