Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4641

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13008 and 13009 are separated by 393 nucleotides mRNA_4640: 13008 - KOG1399 Flavin-containing monooxygenase, at 666,733 to 668,799 13008 mRNA_4641: 13009 - KOG1161 Protein involved in vacuolar polyphosphate accumulation, contains SPX domain, at 669,193 to 672,697 13009

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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668,314 + 13008 mRNA_4640 0.76 -0.3
668,398 - 13008 mRNA_4640 0.81 -0.0
668,592 + 13008 mRNA_4640 0.90 -0.8
668,746 - -0.5
668,747 - +0.5
668,878 + +0.2
668,898 - +1.0
669,789 + 13009 mRNA_4641 0.17 +0.9
670,057 + 13009 mRNA_4641 0.25 +0.0
670,183 - 13009 mRNA_4641 0.28 -0.9
672,268 + 13009 mRNA_4641 0.88 +2.2
672,701 - +1.3
672,717 - -0.2
672,822 - -0.0
672,827 - +0.1
672,827 - +1.2
672,827 - +0.7
672,831 - -1.0
672,836 + +0.2
672,839 - -0.0
672,858 - +0.3
672,860 + +1.6
672,860 + -1.0
672,864 - -1.0
672,873 - +1.0
672,899 + -0.1
673,014 + +1.5
673,025 + -0.2
673,038 + -1.6
673,139 - -1.8
673,399 - +0.3
673,457 + -0.3

Or see this region's nucleotide sequence