Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4647

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13014 and 13015 are separated by 415 nucleotides13015 and 13016 are separated by 96 nucleotides mRNA_4646: 13014 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 681,473 to 684,221 13014 mRNA_4647: 13015 - K03032 PSMD1, RPN2 26S proteasome regulatory subunit N2, at 684,637 to 688,290 13015 mRNA_4648: 13016 - HMMPfam-Mediator complex subunit Med5-PF08689, at 688,387 to 691,863 13016

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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683,719 + 13014 mRNA_4646 0.82 +1.0
683,722 - 13014 mRNA_4646 0.82 +1.1
683,728 + 13014 mRNA_4646 0.82 +1.1
683,729 - 13014 mRNA_4646 0.82 -0.0
683,943 - 13014 mRNA_4646 0.90 -0.7
684,073 - +0.8
684,304 - -0.6
684,325 + +1.0
684,330 - +1.2
684,342 - +0.5
684,595 - +0.6
684,627 + +0.4
687,716 + 13015 mRNA_4647 0.84 +1.1
688,331 - +0.1
688,360 - +0.8
688,453 - -0.1
688,631 - +1.2

Or see this region's nucleotide sequence