Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4674

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13041 and 13042 are separated by 525 nucleotides13042 and 13043 are separated by 191 nucleotides mRNA_4673: 13041 - K01069 E3.1.2.6, gloB hydroxyacylglutathione hydrolase, at 743,886 to 745,346 13041 mRNA_4674: 13042 - K08150 SLC2A13, ITR MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13, at 745,872 to 747,839 13042 mRNA_4675: 13043 - SUPERFAMILY--SSF53448, at 748,031 to 749,259 13043

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
744,954 + 13041 mRNA_4673 0.73 +0.1
744,966 + 13041 mRNA_4673 0.74 -0.8
745,219 - +0.3
745,228 + +0.9
745,295 + +0.7
745,330 - -0.8
745,362 - +1.0
745,409 - -0.9
745,414 - +1.0
745,415 - -0.8
745,419 - +0.7
745,420 - +0.4
745,421 + +0.5
745,421 + -1.3
745,424 + +0.7
745,428 - -0.0
745,432 + +1.0
745,434 - -2.2
745,437 + +1.1
745,450 - +1.0
745,455 + -0.0
745,456 - +0.8
745,496 - +1.7
745,502 + -0.4
745,552 + -0.4
745,562 + -0.5
745,569 + +0.2
745,574 - -0.3
745,581 - +0.5
745,585 + -1.4
745,591 + +0.1
745,654 - +1.5
745,714 - -0.2
745,717 - -1.4
745,733 + +0.3
745,734 + -0.9
745,756 + +0.8
745,774 + +1.3
745,904 - -0.3
745,905 - +3.9
746,216 + 13042 mRNA_4674 0.17 +2.8
746,652 + 13042 mRNA_4674 0.40 -1.2
746,801 - 13042 mRNA_4674 0.47 -0.4
747,233 - 13042 mRNA_4674 0.69 +2.0
747,384 + 13042 mRNA_4674 0.77 +0.2
747,499 + 13042 mRNA_4674 0.83 -1.0
747,684 + +0.4
747,815 + +0.1
747,839 + +0.7

Or see this region's nucleotide sequence