Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4689

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13057 and 13058 are separated by 632 nucleotides mRNA_4689: 13057 - Hypothetical Protein, at 781,177 to 782,706 13057 mRNA_4690: 13058 - HMMPfam-Heterokaryon incompatibility protein Het-C-PF07217, at 783,339 to 787,092 13058

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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780,195 + +0.2
780,220 - +2.2
780,807 + -0.3
780,926 - +0.1
781,095 - +0.4
781,114 - -0.5
781,117 - -0.0
781,122 + -0.3
781,123 + +0.0
781,127 + +1.1
781,129 - +0.7
781,129 + +1.0
781,141 - +0.4
781,150 + +0.1
781,250 - +0.8
781,257 - +1.2
781,261 + +1.5
781,265 + +1.0
781,266 - -2.2
781,281 + +0.4
781,412 - 13057 mRNA_4689 0.15 +0.2
781,415 - 13057 mRNA_4689 0.16 +1.0
781,427 - 13057 mRNA_4689 0.16 +1.1
781,430 - 13057 mRNA_4689 0.17 +0.7
781,431 + 13057 mRNA_4689 0.17 -0.2
781,432 - 13057 mRNA_4689 0.17 -0.2
781,433 + 13057 mRNA_4689 0.17 -0.4
781,559 + 13057 mRNA_4689 0.25 +3.1
781,580 - 13057 mRNA_4689 0.26 +0.7
781,714 + 13057 mRNA_4689 0.35 +0.7
781,729 - 13057 mRNA_4689 0.36 +0.4
781,736 + 13057 mRNA_4689 0.37 +0.6
781,737 - 13057 mRNA_4689 0.37 +0.6
782,003 - 13057 mRNA_4689 0.54 -1.7
782,043 + 13057 mRNA_4689 0.57 -1.7
782,050 + 13057 mRNA_4689 0.57 +1.3
782,289 - 13057 mRNA_4689 0.73 -0.8
782,881 - +0.1
783,059 - +3.2
783,357 - -0.1

Or see this region's nucleotide sequence