Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4716

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13083 and 13084 are separated by 222 nucleotides mRNA_4715: 13083 - KOG1730 Thioredoxin-like protein, at 840,551 to 841,550 13083 mRNA_4716: 13084 - SUPERFAMILY--SSF55753, at 841,773 to 842,668 13084

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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840,780 + 13083 mRNA_4715 0.23 +0.3
841,057 + 13083 mRNA_4715 0.51 -0.3
841,060 + 13083 mRNA_4715 0.51 +2.5
841,237 + 13083 mRNA_4715 0.69 +2.9
841,369 - 13083 mRNA_4715 0.82 +0.1
841,376 + 13083 mRNA_4715 0.82 +0.4
841,508 + -0.0
841,777 + +0.6
841,792 + +0.6
841,799 - +1.2
841,801 + +1.4
841,945 - 13084 mRNA_4716 0.19 +1.6
841,949 - 13084 mRNA_4716 0.20 +0.7
841,953 - 13084 mRNA_4716 0.20 -1.6
843,134 - +0.6
843,245 + +0.3
843,258 + -0.3
843,374 - -0.0
843,400 + +1.1
843,408 + +2.8
843,413 + -0.7
843,553 - -0.0
843,572 + +0.8
843,584 - +0.8

Or see this region's nucleotide sequence