Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4753

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13120 and 13121 are separated by 285 nucleotides13121 and 13122 are separated by 544 nucleotides mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922,993 to 927,297 13120 mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927,583 to 931,061 13121 mRNA_4754: 13122 - ProSiteProfiles-F-box domain profile.-PS50181, at 931,606 to 933,249 13122

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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926,672 - 13120 mRNA_4752 0.85 +1.2
926,822 + 13120 mRNA_4752 0.89 +0.7
926,841 + 13120 mRNA_4752 0.89 +0.9
926,930 - +1.3
926,936 - +0.3
927,146 + -0.4
927,225 - -0.6
927,384 - -0.0
927,687 + -0.6
928,093 + 13121 mRNA_4753 0.15 +1.6
928,145 - 13121 mRNA_4753 0.16 +1.9
928,208 - 13121 mRNA_4753 0.18 +0.8
928,215 + 13121 mRNA_4753 0.18 -2.5
928,365 - 13121 mRNA_4753 0.22 -0.0
928,367 + 13121 mRNA_4753 0.23 +0.4
928,725 + 13121 mRNA_4753 0.33 +1.8
928,810 - 13121 mRNA_4753 0.35 -0.1
928,834 - 13121 mRNA_4753 0.36 +0.6
928,937 - 13121 mRNA_4753 0.39 +1.9
928,963 - 13121 mRNA_4753 0.40 -0.5
929,143 + 13121 mRNA_4753 0.45 +1.9
929,262 - 13121 mRNA_4753 0.48 +0.0
929,577 - 13121 mRNA_4753 0.57 +4.0
929,821 - 13121 mRNA_4753 0.64 -0.1
929,827 + 13121 mRNA_4753 0.65 -0.1
929,830 - 13121 mRNA_4753 0.65 +0.8
929,841 + 13121 mRNA_4753 0.65 +2.1
929,850 - 13121 mRNA_4753 0.65 +2.5
929,884 + 13121 mRNA_4753 0.66 -0.4
930,106 - 13121 mRNA_4753 0.73 -0.0
930,118 - 13121 mRNA_4753 0.73 -2.0
930,118 + 13121 mRNA_4753 0.73 -0.6
930,303 + 13121 mRNA_4753 0.78 -0.1
930,308 - 13121 mRNA_4753 0.78 -2.3
930,429 - 13121 mRNA_4753 0.82 +0.0
930,441 - 13121 mRNA_4753 0.82 -0.1
930,493 - 13121 mRNA_4753 0.84 +0.7
930,568 - 13121 mRNA_4753 0.86 -0.4
930,593 + 13121 mRNA_4753 0.87 +1.0
930,908 + +3.1
931,011 - +0.5
931,024 + +1.9
931,031 - +0.2
931,036 - +0.4
931,051 + -0.0
931,202 + -2.4
931,204 - +0.8
931,211 + +1.7
931,214 - -1.3
931,336 + +0.0
931,336 + -0.3
931,342 - +0.5
931,343 - -2.5
931,347 + -0.1
931,357 - +0.4
931,359 - +0.3
931,360 - +1.3
931,360 + +0.3
931,361 - -0.5
931,367 - +0.9
931,376 + +0.4
931,376 + +0.6
931,379 + -1.2
931,386 - +1.5
931,413 + +0.4
931,508 - -0.1
931,524 + -0.2
931,540 - +1.4
931,680 - -0.7
931,801 - 13122 mRNA_4754 0.12 -2.0
931,806 - 13122 mRNA_4754 0.12 +0.1
931,813 + 13122 mRNA_4754 0.13 +2.1
931,881 - 13122 mRNA_4754 0.17 -1.1
931,955 - 13122 mRNA_4754 0.21 +0.2
931,989 + 13122 mRNA_4754 0.23 +1.0
931,990 - 13122 mRNA_4754 0.23 -1.7
932,016 + 13122 mRNA_4754 0.25 +3.9

Or see this region's nucleotide sequence