Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4762

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13130 and 13131 are separated by 709 nucleotides mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946,790 to 947,960 13130 mRNA_4763: 13131 - KOG1263 Multicopper oxidases, at 948,670 to 952,404 13131

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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945,832 - -0.9
945,837 - -0.8
945,842 + +0.0
946,099 - -1.4
946,168 + +0.2
946,173 + +2.4
946,292 - -0.3
946,445 - +1.3
946,516 + +1.6
946,549 - +0.1
946,746 + +0.9
947,222 - 13130 mRNA_4762 0.37 -0.4
947,224 - 13130 mRNA_4762 0.37 +0.9
947,679 - 13130 mRNA_4762 0.76 +2.0
947,858 + +2.6
948,115 - +0.2
948,136 - +0.2
948,187 + -0.7
948,188 + -0.6
948,292 - +1.0
948,426 - +0.3
948,458 + +1.4
948,584 + +0.4

Or see this region's nucleotide sequence