Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4774

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13141 and 13142 are separated by 704 nucleotides13142 and 13143 are separated by 629 nucleotides mRNA_4773: 13141 - KOG0254 Predicted transporter (major facilitator superfamily), at 984,416 to 986,874 13141 mRNA_4774: 13142 - K02998 RP-SAe, RPSA small subunit ribosomal protein SAe, at 987,579 to 988,756 13142 mRNA_4775: 13143 - K01724 PCBD, phhB 4a-hydroxytetrahydrobiopterin dehydratase, at 989,386 to 989,809 13143

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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986,593 + 13141 mRNA_4773 0.89 +2.7
986,603 - 13141 mRNA_4773 0.89 +0.4
986,917 + +0.6
987,020 - +0.7
987,190 - +0.2
987,208 - +0.3
988,806 - +0.3
988,996 - -0.9
989,027 + -0.5
989,029 - +0.2
989,296 - +1.9
989,591 + 13143 mRNA_4775 0.48 +0.6
989,611 + 13143 mRNA_4775 0.53 -2.1
989,745 - 13143 mRNA_4775 0.85 -0.9
989,745 + 13143 mRNA_4775 0.85 -0.4
989,750 - 13143 mRNA_4775 0.86 -0.1
989,750 - 13143 mRNA_4775 0.86 +0.5

Or see this region's nucleotide sequence