Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4792

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13159 and 13160 are separated by 940 nucleotides mRNA_4791: 13159 - ProSiteProfiles-BTB domain profile.-PS50097, at 1,021,577 to 1,022,865 13159 mRNA_4792: 13160 - Hypothetical Protein, at 1,023,806 to 1,024,351 13160

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,023,135 - +0.3
1,023,154 + +1.9
1,023,295 + +0.4
1,023,414 - +2.2
1,023,429 + -0.2
1,023,448 + +0.3
1,023,525 - -1.5
1,023,707 - -0.7
1,024,174 - 13160 mRNA_4792 0.67 +1.5
1,024,242 + 13160 mRNA_4792 0.80 +3.0
1,024,250 - 13160 mRNA_4792 0.81 +1.0
1,024,294 - 13160 mRNA_4792 0.89 -0.1
1,024,301 - -1.4
1,024,685 + -1.3
1,024,696 + +0.2
1,024,696 - +3.7
1,024,705 - +0.0
1,024,787 + +1.3
1,024,792 + +1.7
1,025,119 - +0.1

Or see this region's nucleotide sequence