Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4823

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13190 and 13191 are separated by 571 nucleotides13191 and 13192 are separated by 237 nucleotides mRNA_4822: 13190 - K13800 CMPK1, UMPK UMP-CMP kinase, at 1,092,248 to 1,093,445 13190 mRNA_4823: 13191 - K12191 CHMP2A charged multivesicular body protein 2A, at 1,094,017 to 1,095,155 13191 mRNA_4824: 13192 - Hypothetical Protein, at 1,095,393 to 1,096,891 13192

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,093,526 + +0.6
1,093,837 - +0.8
1,093,864 - -0.7
1,093,973 - +0.4
1,095,125 + +0.0
1,095,132 - -1.9
1,095,139 + -0.5
1,095,149 + +1.8
1,095,246 + +0.5
1,095,296 - +1.0
1,095,463 - +0.9
1,095,537 - +0.7
1,095,592 + 13192 mRNA_4824 0.13 -0.5
1,095,889 + 13192 mRNA_4824 0.33 -4.3
1,095,907 + 13192 mRNA_4824 0.34 -2.3
1,096,047 - 13192 mRNA_4824 0.44 +0.3
1,096,048 + 13192 mRNA_4824 0.44 +0.2
1,096,048 + 13192 mRNA_4824 0.44 +4.2
1,096,048 + 13192 mRNA_4824 0.44 -0.5

Or see this region's nucleotide sequence